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Recent Publications

In Preparation

• Brown, A.L.
  Space Reduction Techniques for Suffix Trees.
• Brown, A.L.
  Genome Alignment Using Suffix Trees in a Software Pipeline.
• Brown, A.L.
  Time Efficient Suffix Array Construction in the Presence of Pathological Data.
• Brown, A.L. & Cichowski, A.
  Genome Alignment Using Partitioned Suffix Trees.

2008

• Jones, C.E., Schwerdt, J., Bretag, T.A., Baumann, U. & Brown, A.L.
  GOSLING: A Rule-Based Sequence Annotator using BLAST and GO, Bioinformatics, Vol. 24, no. 22, 2008, pp 2628-2629; doi: 10.1093/bioinformatics/btn486.

2007

• Jones, C.E., Brown, A.L., & Baumann, U.
  Estimating the Annotation Error Rate of Curated GO Database Sequence Annotations, BMC Bioinformatics 2007, 8:170.

2005

• Jones, C.E., Baumann, U. & Brown, A.L.
  Automated Methods of Predicting the Function of Biological Sequences using GO and BLAST, BMC Bioinformatics 2005, 6:272.

2004

• Brown, A.L.
  Constructing Chromosome Scale Suffix Trees, Proc. of the 2nd Asia Pacific Bio-informatics Conference, APBC'04, Otago University, Dunedin, New Zealand, 18 - 22 January, (2004).

2001

• Brown, A.L.
  Incremental Garbage Collection in Massive Object Stores, Proc. of the 24th Australasian Computer Science Conference, ACSC'2001, Gold Coast, Queensland, Australia, 29 January - 1 February, (2001).

2000

• Munro, D.S. & Brown, A.L.
  Evaluating Partition Selection Policies using the PMOS Garbage Collector, Proc. of the 9th International Workshop on Persistent Object Systems: Their Design Implementation and Use, Lillehammer, Norway, 6-8 September (2000), pp104-115.
• Brown, F. & Munro, D.
  PMOS Revitalised, Proc. of the Seventh IDEA Workshop, Victor Harbour, South Australia, Australia, 4-7 February, (2000).
• Brown, F.
  Exposing Memory Mapped I/O using NFS, Proc. of the 23rd Australasian Computer Science Conference, ACSC'2000, Canberra, ACT, Australia, 31 January - 3 February, (2000).
• Lew, K.C.F. & Brown, A.L.
  A Model of Persistent Software Composition, Proc. of the 23rd Australasian Computer Science Conference, ACSC'2000, Canberra, ACT, Australia, 31 January - 3 February, (2000).

Recent Grants

2008

• Brown A.L. & Alexander B.
  An Integrated Web Based Assignment Submission, Assessment and Feedback System A$40,000
  2008 University Implementation Grants for Learning and Teaching Enhancement, The University of Adelaide, 2008.
• Brown A.L.
  Travel Scholarship c.A$5,000
  Apple University Consortium, Apple World Wide Developers Conference Scholarships Program, 2008.

2007

• Alexander B.,Falkner K., Michalewicz Z., Brown A.L. & el-Gindy H.
  A Problem Solving Curriculum in Computing us$40,000
  Google Research Award Scheme, 2007.
• Brown A.L.
  Real-time PCR Analysis Tools A$10,000
  Adelaide Research and Innovation Pty Ltd, 2007.

2006

• Brown A.L.
  Real-time PCR Analysis Tools A$20,000
  The University of Adelaide, 2006.

2004

• Brown A.L.
  Travel Scholarship A$6,300
  Apple University Consortium, Apple World Wide Developers Conference Scholarships Program, 2004.

2003

• Brown A.L.
  Constructing Suffix Trees Larger than Memory A$9,983
  Apple University Consortium, AUDF Development Grant Program, 2003.

2002

• Brown A.L.
  Incremental Garbage Collection for Massive Object Stores A$7,000
  University of Adelaide Small Grants Scheme, 2002.

2001

• Brown A.L.
  Partition Selection Policies for Garbage Collection of an OODBMS A$147,000
  Sun Microsystems Academic Equipment Grants Scheme, 2001.
• Brown A.L.
  Real-world Software Engineering using Virtual Reality A$47,000
  Sun Microsystems Academic Equipment Grants Scheme, 2001.
• Brown A.L.
  Simulation of Massive Object Stores A$6,500
  University of Adelaide Small Grants Scheme, 2001.
• Brown A.L.
  Travel Scholarship A$4,000 Apple University Consortium, Apple World Wide Developers Conference Scholarships Program, 2001.